I followed the workflow provided by the author but the output file was 0 line, T-Coffee Dataset Information Number: 172 Name: T-Coffee on data 19: newick.dnd Created: Mon Sep 28 03:16:34 2020 (UTC) Filesize: 0 bytes Dbkey: ? Format: nhx Job Information Galaxy Tool ID: toolshe…

Hi @Ola_Alessa If one tool is failing because of permissions problems with your input datasets, then other tools will too. There are other options but not exact options and most are in that same tool group. But reviewing again that doesn’t address the root issue. Permissions to view your data linke…

even with a simple alignment file, T coffee gives 0 lines.

I think the error is “Invalid dataset ID or you are not allowed to access this dataset” You can see that by clicking on stderr, I personally don’t know what is means but maybe it helps you. EDIT: Just found out this is a galaxy specific error. Maybe this helps https://biostar.usegalaxy.org/p/1930…

@gbbio is correct. You may not have permission to use the dataset. If it was shared with you by someone else, ask them to re-share with permissions granted. How that is set up by default can differ by Galaxy server, but this is how to manage permissions on all running a current release: FAQ: https:…

Thank you very much for your answers, and I have another question, is there a tool or workflow in galaxy to visualize homologs gene cluster between different species.@Jennifer @gbbio thank you very much again.

thank you very much @jennaj ,I did not make my question clear enough, i want something similar to the workflow GeneSeqToFamily, I have gene clusters I am interested to compare and visualize between different species, but when i follow the workflow GeneSeqToFamily, T coffee fails every time, therefor…

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T coffee empty out put file

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