Welcome, @santatra
I’m not sure if I have understood your question completely but you can clarify more about what you would like to do. Could you explain a bit more about your goals?
Meanwhile, I can share some analysis protocols through tutorials that may help to frame the kinds of questions we can answer here.
If you are completely new to Galaxy, this is a good place to start.
Then, this tutorial is an example of a bacterial genome assembly. It involves WGS and ONT reads.
You can find more tutorials using keywords or by navigating the training site directly.
- Prokaryote → GTN Materials Search
- Assembly → Assembly / Tutorial List
- Microbiome → Microbiome / Tutorial List
Hope this helps! 