Hello What is the normalization method used in Deseq2 in galaxy.eu exactly ? I mean RPKM or TPM ? Could some one please explain .\ best

Hi @amir , the normalization method used by Deseq2 is called DESeq2’s median of ratios . This method relies on the calculation of size factors (s), whose objective is to render counts from different samples, which may have been sequenced to different depths, comparable. Herein lies the importance of…

What is Normalization method used in Deseq2 galaxy

usegalaxy.eu support

tnabtaf October 24, 2021, 5:44pm 2

Hi Amir,

Take a look at this post and the links that it has.

Hope this helps,
Dave C

1 Like

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What is Normalization method used in Deseq2 galaxy

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