When i upload my files and invoke the workflow, it says me in some file selection controls:
the previously selected dataset has been deleted
despite i have not deleted anything in the current history. And says “Workflow submission failed” if i press “run”. However if i “copy” the whole history and invoke the workflow on the “copied” history, it works fine.
Also i made automated workflow like advised here Workflow automation? - #6 by jennaj , and it began to schedule, but only 7 of 60 steps were scheduled, and then it said
Invocation scheduling failed - Galaxy administrator may have additional details in logs.
But when i looked at the “View Error Logs” in the admin panel, i saw “No errors available.”, so previous “Workflow submission failed” errors also left no trace in the logs.
Then i looked at galaxy.log and found many letters there. Here are all error entries for march-april:
galaxy.web.framework.decorators ERROR 2021-03-18 18:16:54,941 [p:484294,w:1,m:0] [uWSGIWorker1Core0] Uncaught exception in exposed API method:
galaxy.jobs DEBUG 2021-03-18 19:05:44,300 [p:484294,w:1,m:0] [LocalRunner.work_thread-2] (1042) setting dataset 1154 state to ERROR
galaxy.jobs DEBUG 2021-03-18 19:05:44,327 [p:484294,w:1,m:0] [LocalRunner.work_thread-0] (1040) setting dataset 1152 state to ERROR
galaxy.jobs DEBUG 2021-03-18 19:07:10,039 [p:484294,w:1,m:0] [LocalRunner.work_thread-0] (1048) setting dataset 1160 state to ERROR
galaxy.jobs.runners ERROR 2021-03-18 19:19:51,740 [p:484294,w:1,m:0] [LocalRunner.work_thread-2] (1049/) Job wrapper finish method failed
galaxy.jobs DEBUG 2021-03-19 20:46:51,586 [p:484294,w:1,m:0] [LocalRunner.work_thread-1] (1105) setting dataset 1224 state to ERROR
galaxy.jobs DEBUG 2021-03-19 23:21:16,758 [p:484294,w:1,m:0] [LocalRunner.work_thread-0] (1111) setting dataset 1234 state to ERROR
galaxy.jobs DEBUG 2021-03-19 23:21:16,766 [p:484294,w:1,m:0] [LocalRunner.work_thread-1] (1057) setting dataset 1172 state to ERROR
galaxy.jobs DEBUG 2021-03-23 14:23:12,842 [p:484294,w:1,m:0] [LocalRunner.work_thread-3] (1132) setting dataset 1257 state to ERROR
galaxy.jobs ERROR 2021-03-23 14:32:17,280 [p:484294,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1043
galaxy.jobs ERROR 2021-03-23 14:32:17,381 [p:484294,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1045
galaxy.jobs ERROR 2021-03-23 14:32:22,933 [p:484294,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1069
galaxy.jobs ERROR 2021-03-23 14:32:23,030 [p:484294,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1120
galaxy.jobs ERROR 2021-03-23 14:32:24,704 [p:484294,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1063
galaxy.jobs ERROR 2021-03-23 14:32:24,850 [p:484294,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1113
galaxy.jobs ERROR 2021-03-23 14:32:25,019 [p:484294,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1115
galaxy.jobs ERROR 2021-03-23 14:32:26,295 [p:484294,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1078
galaxy.jobs ERROR 2021-03-23 14:32:26,630 [p:484294,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1122
galaxy.jobs ERROR 2021-03-23 14:32:27,064 [p:484294,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1123
galaxy.jobs ERROR 2021-03-23 14:32:27,238 [p:484294,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1125
galaxy.jobs ERROR 2021-03-23 14:32:27,419 [p:484294,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1126
galaxy.web.framework.decorators ERROR 2021-03-25 15:22:15,094 [p:44177,w:1,m:0] [uWSGIWorker1Core3] Uncaught exception in exposed API method:
galaxy.web.framework.decorators ERROR 2021-03-25 15:22:23,517 [p:44177,w:1,m:0] [uWSGIWorker1Core0] Uncaught exception in exposed API method:
galaxy.web.framework.decorators ERROR 2021-03-25 15:22:23,805 [p:44177,w:1,m:0] [uWSGIWorker1Core1] Uncaught exception in exposed API method:
galaxy.jobs DEBUG 2021-03-26 19:13:47,828 [p:180146,w:1,m:0] [LocalRunner.work_thread-3] (1208) setting dataset 1339 state to ERROR
galaxy.jobs DEBUG 2021-03-26 19:21:21,702 [p:180146,w:1,m:0] [LocalRunner.work_thread-2] (1211) setting dataset 1342 state to ERROR
galaxy.jobs DEBUG 2021-04-01 15:51:37,634 [p:180146,w:1,m:0] [LocalRunner.work_thread-3] (1440) setting dataset 1598 state to ERROR
galaxy.jobs DEBUG 2021-04-06 13:45:12,989 [p:180146,w:1,m:0] [LocalRunner.work_thread-3] (1590) setting dataset 1763 state to ERROR
galaxy.jobs DEBUG 2021-04-06 13:58:24,889 [p:180146,w:1,m:0] [LocalRunner.work_thread-0] (1592) setting dataset 1765 state to ERROR
galaxy.jobs DEBUG 2021-04-06 19:19:32,792 [p:180146,w:1,m:0] [LocalRunner.work_thread-3] (1594) setting dataset 1767 state to ERROR
galaxy.jobs.runners ERROR 2021-04-06 19:19:36,931 [p:180146,w:1,m:0] [LocalRunner.work_thread-3] (1597/) Job wrapper finish method failed
galaxy.jobs DEBUG 2021-04-06 19:19:41,142 [p:180146,w:1,m:0] [LocalRunner.work_thread-3] (1598) setting dataset 1772 state to ERROR
galaxy.jobs ERROR 2021-04-06 19:19:41,958 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1601
galaxy.jobs ERROR 2021-04-06 19:19:44,578 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1615
galaxy.jobs ERROR 2021-04-06 19:19:45,945 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1627
galaxy.jobs ERROR 2021-04-06 19:19:47,349 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1637
galaxy.jobs ERROR 2021-04-06 19:19:47,772 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1638
galaxy.tools.toolbox.base ERROR 2021-04-06 19:33:57,892 [p:180146,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/codingSnps.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/codingSnps.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-06 19:33:57,893 [p:180146,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/add_scores.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/add_scores.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-06 19:33:57,894 [p:180146,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'phenotype_association/sift.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/sift_db.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-06 19:33:57,895 [p:180146,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'melanoma_tools/scripts_hla_la.xml', '[Errno 2] No such file or directory')
galaxy.tools.toolbox.base ERROR 2021-04-06 19:33:57,902 [p:180146,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/codingSnps.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/codingSnps.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-06 19:33:57,903 [p:180146,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/add_scores.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/add_scores.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-06 19:33:57,904 [p:180146,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'phenotype_association/sift.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/sift_db.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-07 11:52:47,046 [p:180146,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/codingSnps.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/codingSnps.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-07 11:52:47,048 [p:180146,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/add_scores.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/add_scores.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-07 11:52:47,049 [p:180146,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'phenotype_association/sift.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/sift_db.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-07 11:52:47,049 [p:180146,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'melanoma_tools/scripts_hla_la.xml', '[Errno 2] No such file or directory')
galaxy.tools.toolbox.base ERROR 2021-04-07 11:52:47,056 [p:180146,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/codingSnps.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/codingSnps.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-07 11:52:47,057 [p:180146,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/add_scores.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/add_scores.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-07 11:52:47,058 [p:180146,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'phenotype_association/sift.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/sift_db.loc'")
galaxy.jobs ERROR 2021-04-07 13:04:59,058 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1648
galaxy.jobs ERROR 2021-04-07 13:04:59,275 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1649
galaxy.jobs ERROR 2021-04-07 13:04:59,496 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1650
galaxy.jobs ERROR 2021-04-07 13:05:00,754 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1659
galaxy.jobs ERROR 2021-04-07 13:05:01,143 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1660
galaxy.jobs ERROR 2021-04-07 13:05:01,416 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1661
galaxy.jobs ERROR 2021-04-07 13:05:02,765 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1672
galaxy.jobs ERROR 2021-04-07 13:05:02,974 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1673
galaxy.jobs DEBUG 2021-04-07 13:07:00,262 [p:180146,w:1,m:0] [LocalRunner.work_thread-0] (1683) setting dataset 1867 state to ERROR
galaxy.jobs DEBUG 2021-04-07 13:44:40,904 [p:180146,w:1,m:0] [LocalRunner.work_thread-2] (1721) setting dataset 1910 state to ERROR
galaxy.jobs DEBUG 2021-04-07 13:44:41,303 [p:180146,w:1,m:0] [LocalRunner.work_thread-3] (1722) setting dataset 1911 state to ERROR
galaxy.jobs ERROR 2021-04-07 13:44:51,501 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1729
galaxy.jobs ERROR 2021-04-07 13:44:51,709 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1730
galaxy.jobs ERROR 2021-04-07 13:44:53,034 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1736
galaxy.jobs ERROR 2021-04-07 13:44:54,297 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1748
galaxy.jobs ERROR 2021-04-07 13:44:55,726 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1756
galaxy.jobs ERROR 2021-04-07 13:44:56,257 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1757
galaxy.jobs ERROR 2021-04-07 13:44:57,795 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1761
galaxy.jobs ERROR 2021-04-07 13:44:58,296 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1762
galaxy.jobs ERROR 2021-04-07 13:44:58,882 [p:180146,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1763
galaxy.jobs DEBUG 2021-04-07 14:57:09,115 [p:310870,w:1,m:0] [LocalRunner.work_thread-1] (1770) setting dataset 1965 state to ERROR
galaxy.jobs.runners ERROR 2021-04-07 15:10:17,426 [p:310870,w:1,m:0] [LocalRunner.work_thread-3] (1772/) Job wrapper finish method failed
galaxy.jobs DEBUG 2021-04-07 15:33:59,106 [p:310870,w:1,m:0] [LocalRunner.work_thread-0] (1773) setting dataset 1970 state to ERROR
ERROR conda.core.link:_execute(568): An error occurred while installing package 'conda-forge::_libgcc_mutex-0.1-conda_forge'.
ERROR conda.core.link:_execute(568): An error occurred while installing package 'conda-forge::ncurses-6.2-h58526e2_4'.
ERROR conda.core.link:_execute(568): An error occurred while installing package 'conda-forge::_libgcc_mutex-0.1-conda_forge'.
galaxy.jobs ERROR 2021-04-08 15:53:19,449 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1781
galaxy.jobs.runners ERROR 2021-04-08 15:53:20,554 [p:315295,w:1,m:0] [LocalRunner.work_thread-1] (1780) Failure preparing job
galaxy.jobs ERROR 2021-04-08 15:53:21,096 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1782
galaxy.jobs ERROR 2021-04-08 15:53:21,620 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1783
galaxy.jobs ERROR 2021-04-08 15:53:22,200 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1784
galaxy.jobs ERROR 2021-04-08 15:53:23,566 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1789
galaxy.jobs ERROR 2021-04-08 15:53:23,841 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1790
galaxy.jobs ERROR 2021-04-08 15:53:25,111 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1800
galaxy.jobs ERROR 2021-04-08 15:53:25,339 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1801
galaxy.jobs ERROR 2021-04-08 15:53:25,577 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1802
galaxy.jobs ERROR 2021-04-08 15:53:27,214 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1807
galaxy.jobs ERROR 2021-04-08 15:53:27,455 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1808
galaxy.jobs ERROR 2021-04-08 15:53:28,858 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1817
galaxy.jobs ERROR 2021-04-08 15:53:29,107 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1818
galaxy.jobs ERROR 2021-04-08 16:12:44,256 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1886
galaxy.jobs ERROR 2021-04-08 16:12:45,127 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1887
galaxy.jobs ERROR 2021-04-08 16:12:47,221 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1888
galaxy.jobs ERROR 2021-04-08 16:12:47,971 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1889
galaxy.jobs ERROR 2021-04-08 16:12:50,675 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1837
galaxy.jobs ERROR 2021-04-08 16:12:51,952 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1838
galaxy.jobs ERROR 2021-04-08 16:12:52,820 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1839
galaxy.jobs ERROR 2021-04-08 16:12:55,946 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1899
galaxy.jobs ERROR 2021-04-08 16:13:00,542 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1850
galaxy.jobs ERROR 2021-04-08 16:13:01,122 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1851
galaxy.jobs ERROR 2021-04-08 16:13:01,635 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1907
galaxy.jobs ERROR 2021-04-08 16:13:03,460 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1858
galaxy.jobs ERROR 2021-04-08 16:13:03,886 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1859
galaxy.jobs ERROR 2021-04-08 16:13:05,793 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1870
galaxy.jobs ERROR 2021-04-08 16:13:06,038 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1871
galaxy.jobs ERROR 2021-04-08 16:13:06,241 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1872
galaxy.jobs ERROR 2021-04-08 16:13:06,518 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1873
galaxy.jobs ERROR 2021-04-08 16:13:10,954 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1925
galaxy.jobs ERROR 2021-04-08 16:13:12,082 [p:315295,w:1,m:0] [JobHandlerQueue.monitor_thread] Unable to cleanup job 1927
galaxy.tools.toolbox.base ERROR 2021-04-08 18:00:29,910 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/codingSnps.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/codingSnps.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-08 18:00:29,912 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/add_scores.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/add_scores.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-08 18:00:29,913 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'phenotype_association/sift.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/sift_db.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-08 18:00:29,914 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'melanoma_tools/scripts_hla_la.xml', '[Errno 2] No such file or directory')
galaxy.tools.toolbox.base ERROR 2021-04-08 18:00:29,925 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/codingSnps.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/codingSnps.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-08 18:00:29,940 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/add_scores.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/add_scores.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-08 18:00:29,942 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'phenotype_association/sift.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/sift_db.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-08 18:05:12,706 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/codingSnps.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/codingSnps.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-08 18:05:12,708 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/add_scores.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/add_scores.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-08 18:05:12,709 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'phenotype_association/sift.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/sift_db.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-08 18:05:12,710 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'melanoma_tools/scripts_hla_la.xml', '[Errno 2] No such file or directory')
galaxy.tools.toolbox.base ERROR 2021-04-08 18:05:12,733 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/codingSnps.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/codingSnps.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-08 18:05:12,734 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/add_scores.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/add_scores.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-08 18:05:12,736 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'phenotype_association/sift.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/sift_db.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-08 18:05:32,510 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/codingSnps.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/codingSnps.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-08 18:05:32,511 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/add_scores.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/add_scores.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-08 18:05:32,512 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'phenotype_association/sift.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/sift_db.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-08 18:05:32,513 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'melanoma_tools/scripts_hla_la.xml', '[Errno 2] No such file or directory')
galaxy.tools.toolbox.base ERROR 2021-04-08 18:05:32,526 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/codingSnps.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/codingSnps.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-08 18:05:32,528 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/add_scores.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/add_scores.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-08 18:05:32,532 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'phenotype_association/sift.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/sift_db.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-09 13:23:00,375 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/codingSnps.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/codingSnps.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-09 13:23:00,376 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/add_scores.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/add_scores.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-09 13:23:00,378 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'phenotype_association/sift.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/sift_db.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-09 13:23:00,378 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'melanoma_tools/scripts_hla_la.xml', '[Errno 2] No such file or directory')
galaxy.tools.toolbox.base ERROR 2021-04-09 13:23:00,385 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/codingSnps.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/codingSnps.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-09 13:23:00,386 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/add_scores.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/add_scores.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-09 13:23:00,387 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'phenotype_association/sift.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/sift_db.loc'")
galaxy.workflow.run ERROR 2021-04-09 15:48:56,907 [p:315295,w:1,m:0] [WorkflowRequestMonitor.monitor_thread] Failed to execute scheduled workflow.
galaxy.tools.toolbox.base ERROR 2021-04-09 15:55:26,230 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/codingSnps.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/codingSnps.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-09 15:55:26,231 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/add_scores.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/add_scores.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-09 15:55:26,232 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'phenotype_association/sift.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/sift_db.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-09 15:55:26,233 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'melanoma_tools/scripts_hla_la.xml', '[Errno 2] No such file or directory')
galaxy.tools.toolbox.base ERROR 2021-04-09 15:55:26,253 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/codingSnps.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/codingSnps.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-09 15:55:26,254 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'evolution/add_scores.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/add_scores.loc'")
galaxy.tools.toolbox.base ERROR 2021-04-09 15:55:26,256 [p:315295,w:1,m:0] [Thread-1] ("Error reading tool configuration file from path '%s': %s", 'phenotype_association/sift.xml', "[Errno 2] No such file or directory: '/data/galaxy/tool-data/sift_db.loc'")
galaxy.jobs DEBUG 2021-04-09 16:02:21,691 [p:315295,w:1,m:0] [LocalRunner.work_thread-1] (2005) setting dataset 2226 state to ERROR
galaxy.workflow.run ERROR 2021-04-09 16:19:44,894 [p:315295,w:1,m:0] [WorkflowRequestMonitor.monitor_thread] Failed to execute scheduled workflow.