|
BAM index, fasta indexes, display applications, custom genome builds, IGV
|
|
3
|
129
|
September 22, 2025
|
|
Need help with the dataset error report on MITOS (version 1.1.7) de-novo annotation tool of metazoan mitochondrial genomes
|
|
5
|
102
|
September 24, 2024
|
|
Linking mouse gene IDs/name to Encode IDs following Salmon and DESeq analysis
|
|
3
|
67
|
July 22, 2025
|
|
Issues with receiving results from FastQC in MultiQC from several collections of samples
|
|
5
|
91
|
October 17, 2025
|
|
Free energy landsape using Bio3d in galaxy
|
|
5
|
89
|
August 18, 2025
|
|
BUSCO for bacterial genome assemblies
|
|
1
|
153
|
January 17, 2025
|
|
Active (green) History dataset: unable to use as input as tools say it was deleted
|
|
4
|
95
|
October 21, 2025
|
|
Resolving memory failures with SPAdes
|
|
2
|
123
|
March 17, 2025
|
|
FAQ: NCBI reference data
:speech_balloon: How to find NCBI Reference data?
Q: Where can I find the URL links to a reference genome FASTA, annotation, or GenBank file?
A: Use the NCBI Genome Assembly page for the organism of interest — for examp…
|
|
0
|
208
|
June 12, 2025
|
|
Ensembl gene annotation gtf for rat problem with RNA STAR
|
|
2
|
119
|
February 26, 2025
|
|
Unknown data type in infer experiment
|
|
1
|
79
|
November 27, 2024
|
|
Data Storage choices when using Workflows
|
|
3
|
99
|
October 21, 2025
|
|
How can I rename a paired Fastq file?
|
|
4
|
87
|
June 24, 2025
|
|
Inquiry about lettuce genome
|
|
2
|
108
|
October 7, 2024
|
|
Cut and run: MACS2 error
|
|
6
|
69
|
July 9, 2025
|
|
Need help to run Phyloseq in Galaxy to characterize microbial taxa
|
|
2
|
103
|
September 17, 2024
|
|
An error of limma
|
|
1
|
125
|
May 2, 2024
|
|
How do I use galaxy tools to create a paired end collection folder (data shapes and organization)
|
|
2
|
97
|
December 3, 2024
|
|
Panaroo tool help
|
|
1
|
115
|
April 16, 2025
|
|
Help with RNA Star, Featurecounts, and reference annotation choices
|
|
1
|
106
|
August 19, 2025
|
|
Question about UMI-tools extract: different version from the tutorial?
|
|
3
|
73
|
August 13, 2025
|
|
Error with Visualize with Krona tool? Use Krona Pie Chart instead!
|
|
1
|
103
|
January 28, 2025
|
|
CREx_rearrangement scenario
|
|
5
|
59
|
September 4, 2025
|
|
Archived history
|
|
3
|
70
|
April 1, 2025
|
|
Extract Genomic DNA
|
|
1
|
54
|
July 9, 2024
|
|
Help me with the error on mem bwa
|
|
1
|
95
|
October 15, 2024
|
|
Collection folder VIDEO: How to create a single or paired end dataset collection folder (shapes and organization)
|
|
3
|
67
|
September 29, 2025
|
|
About DESeq2 Errors
|
|
2
|
76
|
September 17, 2024
|
|
Downloading a List with 250+ files and Renaming
|
|
2
|
76
|
May 6, 2025
|
|
Why collections?
Collections are one of the super-killer features of Galaxy!
By Anton Nekrutenko
October 21, 2025
|
|
0
|
126
|
October 21, 2025
|
|
TEtranscripts input datasets
|
|
3
|
62
|
August 11, 2025
|
|
This job was terminated because itused more memory than it wasallocated
|
|
1
|
86
|
April 25, 2025
|
|
Tool 'sra_source' does not exist
|
|
2
|
70
|
September 23, 2025
|
|
2025 Update! Convert Genome Coordinates? Avoid :warning: Liftover and try using CrossMap
|
|
2
|
66
|
September 25, 2025
|
|
Need Help with Mapping Genome Skimming Data and Generating Consensus Sequences in Galaxy
|
|
1
|
79
|
September 16, 2024
|
|
MITOS2 error can't run job
|
|
3
|
53
|
August 29, 2025
|
|
Kraken2 reference database for shotgun sequencing data
|
|
4
|
46
|
September 30, 2025
|
|
Asking about qiime2 tools import
|
|
1
|
68
|
August 5, 2025
|
|
SnpSift Filter help
|
|
1
|
63
|
January 3, 2025
|
|
Kraken2 Job Fails Repeatedly on Galaxy
|
|
2
|
51
|
July 30, 2025
|
|
Error reported for fgsea - gene set enrichment tool
|
|
1
|
58
|
May 16, 2025
|
|
Apollo help for Create or Update Organism
|
|
1
|
58
|
March 17, 2025
|
|
Bakta output option for a GenBank file is tabular only, not gbff
|
|
1
|
55
|
July 26, 2025
|
|
Kraken2 Not supporting the required formats for paired sequencing
|
|
1
|
53
|
September 8, 2025
|
|
mergePreClusterReads in LotuS2
|
|
3
|
36
|
August 12, 2025
|
|
Convert GTF to BED12
|
|
1
|
47
|
August 28, 2025
|
|
DADA2 Merge Pairs troubleshooting
|
|
1
|
45
|
August 27, 2025
|
|
Discrepancy between data analyzed by R and Galaxy
|
|
1
|
41
|
September 20, 2024
|
|
Removing PCR duplicates in GStacks2
|
|
2
|
33
|
October 18, 2025
|
|
kMetaShot install
|
|
1
|
40
|
August 4, 2025
|