Resources

Topic	Replies	Views	Activity
How to solve problems with data formats: GTN Data Manipulation Olympics tutorials! text-manipulation , troubleshooting , resources , tool-help , edger , gtn-olympics	2	161	March 13, 2025
Assembly statistics in reference based RNA seq analysis_tools transcriptomics , resources , tool-help , rna_quast	1	332	September 6, 2023
FAQ: NCBI reference data reference-index , reference-annotation , reference-genome , resources	0	466	June 12, 2025
How to review a BAM! Metadata, reference genome, workflows resources , rna_star , rseqc_infer_experiment	1	155	November 27, 2024
Help with RNA Star, Featurecounts, and reference annotation choices transcriptomics , reference-annotation , resources , featurecounts , iwc-workflows	1	273	August 19, 2025
Cut and run: MACS2 error macs2 , epigenetics , resources , tool-help	6	139	July 9, 2025
Linking mouse gene IDs/name to Encode IDs following Salmon and DESeq analysis transcriptomics , resources , tool-help , salmon	2	116	April 16, 2025
Need help with the dataset error report on MITOS (version 1.1.7) de-novo annotation tool of metazoan mitochondrial genomes tool-help , mitos	5	145	September 24, 2024
TEtranscripts input datasets tool-help	3	174	August 11, 2025
HUMAnN fails due to MetaPhlAn database mismatch troubleshooting , resources , tool-help , combine_metaphlan_humann , metaphlan , microgalaxy , humann , combine_metaphlan2_humann2	1	247	November 17, 2025
Ensembl gene annotation gtf for rat problem with RNA STAR troubleshooting , mapping , reference-annotation , reference-genome , resources	2	197	February 26, 2025
CREx_rearrangement scenario tool-help , revoluzer_crex	4	152	September 4, 2025
How can I rename a paired Fastq file? collections , resources , fastq_manipulation	4	148	June 24, 2025
How database assignments are used to access a fasta index: custom genomes, custom builds, server indexes fasta-manipulation , reference-index , custom-genome , galaxy-local , troubleshooting , custom-build , resources	1	226	April 17, 2024
Kraken2 reference database for shotgun sequencing data resources , kraken2 , microgalaxy , iwc-workflows	4	141	September 30, 2025
Tool 'sra_source' does not exist gtn-tutorial , upload , resources , iwc-workflows	2	182	September 23, 2025
Why collections? news , dataset , collections , resources , collection-shape Collections are one of the super-killer features of Galaxy! By Anton Nekrutenko October 21, 2025	0	314	October 21, 2025
Data Storage choices when using Workflows storage-dashboard , resources , scratch-space	2	181	January 10, 2025
Collection folder VIDEO: How to create a single or paired end dataset collection folder (shapes and organization) collections , resources , tool-help , metawrapmg_binning	3	145	September 29, 2025
Resolving memory failures with SPAdes spades , exceeds-memory-error , resources , tool-help	1	204	August 27, 2024
Inquiry about lettuce genome reference-index , custom-genome , reference-annotation , reference-genome , custom-build , resources	2	164	October 7, 2024
Archived history igv , history-archive , resources	3	142	April 1, 2025
Downloading a List with 250+ files and Renaming history , download , relabel-collection , resources	2	155	May 6, 2025
How do I use galaxy tools to create a paired end collection folder (data shapes and organization) collections , resources	2	153	December 3, 2024
Question about UMI-tools extract: different version from the tutorial? tool-help , umi_tools_extract	3	129	August 13, 2025
Active (green) History dataset: unable to use as input as tools say it was deleted troubleshooting , storage-dashboard , resources	3	128	December 17, 2024
Extract Genomic DNA resources , tool-help , bedtools_getfastabed , extract-genomic-dna-1	1	102	July 9, 2024
Panaroo tool help tool-help , panaroo	1	176	April 16, 2025
Need help to run Phyloseq in Galaxy to characterize microbial taxa tool-help , qiime2 , interactive_tool_phyloseq	2	143	September 17, 2024
An error of limma tool-help , limma_voom	1	171	May 2, 2024
Error with Visualize with Krona tool? Use Krona Pie Chart instead! resources , tool-help , krona-text , taxonomy_krona_chart	1	166	January 28, 2025
MITOS2 error can't run job tool-help , mitos2	3	108	August 29, 2025
Help me with the error on mem bwa gtn-tutorial , troubleshooting , bwa-mem , tool-help	1	148	October 15, 2024
Using LotuS2: tutorials and resources resources , tool-help , lotus2	3	100	August 12, 2025
Asking about qiime2 tools import tool-help , qiime2_core__tools__import	1	136	August 5, 2025
Kraken2 Not supporting the required formats for paired sequencing tool-help , kraken2 , iwc-workflows	1	126	September 8, 2025
This job was terminated because itused more memory than it wasallocated exceeds-memory-error , resources , single-cell	1	125	April 25, 2025
Need Help with Mapping Genome Skimming Data and Generating Consensus Sequences in Galaxy mapping , tool-help	1	120	September 16, 2024
Error reported for fgsea - gene set enrichment tool transcriptomics , resources , tool-help , fgsea	1	111	May 16, 2025
About DESeq2 Errors transcriptomics , resources , deseq2 , featurecounts	1	107	August 14, 2024
Apollo help for Create or Update Organism tool-help , apollo	1	102	March 17, 2025
2025 Update! Convert Genome Coordinates? Avoid :warning: Liftover and try using CrossMap liftover , tool-help , crossmap	1	99	September 12, 2024
Kraken2 Job Fails Repeatedly on Galaxy devops-administration , tool-help	2	80	July 30, 2025
Convert GTF to BED12 tool-help , gtftobed12	1	90	August 28, 2025
DADA2 Merge Pairs troubleshooting dada2_mergepairs	1	89	August 27, 2025
MaAsLin2 job fails due to glmmTMB / TMB version mismatch troubleshooting , tool-help , maaslin2	2	70	August 21, 2025
Large genome assembly? See VGP resources and access your self-serve extended data storage! assembly , storage-dashboard , resources , iwc-workflows	1	84	August 20, 2025
SnpSift Filter help tool-help , snpsift_filter	1	78	January 3, 2025
Flye giving error with bacterial genome assembly , resources	1	77	August 21, 2025
How to inspect the details of a tool wrapper: reproducibility and versioning resources , tool-help	1	76	September 11, 2024