Hello, I have used Kraken2 with the nt_core database to classify bacteria as well as the metazoa I need. I want to use Bracken. However, the nt_core database is not an option. I selected the PlusPF (Version 2024-01-12, k-mer: 35, read: 100) for use with Bracken. However, I am concerned with inconsi…

Adding nt_core db to Bracken and related workflow tools

jennaj January 28, 2025, 2:24am 5

Hi @Laura_Peirson I’ve created a ticket for the request to help the administrators keep this organized and specific.

Bracken kmer distribution

Bracken database missed

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