Hi,
I have been trying to use bracken, but it shows an error with the dataset. I have re-run the process several times and changed the galaxy server, using the same dataset used with kraken2, i.e. plusPF still not getting the results. The input file is a Kraken2 report file; a screenshot of the error is attached below. Kindly help me to proceed with this.
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I’ve been experiencing the same issue. Hopefully we’ll receive good advice soon.
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Thanks @zpho3nix !! and @sm9412 you can follow along here as we work through this. → Kraken Report Issue - #5 by wm75
The issue is happening between servers. More soon! We’ll work with everyone until resolved. Thank you so much for reporting bugs!
Maybe it’s a bit premature to think that this must be the same issue as in the other thread.
@sm9412 can you share the history you took the screenshots from just to confirm?
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Hey, here it is
It is showing no reads, although the report shows otherwise. Anyway, I tried with another set of reads, and this time, it showed another error in the history, which is attached below.
sorry @sm9412 but I didn’t mean providing more screenshots, but a link to a shared Galaxy history (see FAQ: Sharing your History on how to do this).