bwa alignent for fastaq download from ENA database


i am working with candida genome project.
i am new with bioinformatics science,i want to use bwa tools to alignment genome strain to reference genome
the refrence stain data easy to download, i need help to download fastaq1 and fastaq2 for the second genome,the SRA number is avilable, i found deposit data at ENA at FASTQ files (Galaxy).
so is that right to download the two fastaq file and used directly without fastaqc

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Hi @dina_yamin!

Yes this is correct. You could also use to download from SRA.

Happy research!

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