I am doing a WGBS (Whole Genome Bisulfite Sequencing Analysis) and would like to adjust an existing workflow such that I am able to manually input strings for customized trimming in the adapter-detection step. The trimming tool used is Trim-Galore. The adapter sequences that I need to remove are shown below:
Would this task be possible? How would I facilitate this change on an existing worfklow? Thanks in advance.