Hello everyone, I’m trying to use the tool “funannotate functional” to integrate Interpro, AntiSmash and EggNog annotation to the previously structural annotated genome.
The Docker message is probably something that can be ignored as chatter in the log.
First, try a rerun for these jobs. Maybe the cluster issue was transient.
If these fail again, is there anything special about these contig regions?
We can help to determine that and what else may be going on (including technical issues). We need to see all the job details. You can generate and post back a share link to the history. If the history is large, you can copy the datasets involved into a new history and share that instead (all inputs and outputs please) but this provides less context.
How to share is in the banner of the forum, also here:
Thank you for your response! I went ahead and checked the contigs, but I couldn’t spot anything particularly unusual—except for one contig that strangely has a high number of “TTA” repeats at the beginning. Not sure if this could be affecting the annotation process in some way, as I have soft-masked the contigs before proceeding.
I also tried re-running the job, but I’m still getting the same error at the same contig regions.
I’ve attached the link to my history so you can take a look at all the job details. Let me know if anything stands out or if you need any additional information.
I think we’ll need help from the EU administrators! I sent in a bug report with a link to this topic and you could too. Plus let’s ping them here. @wm75 would you be able to help? Thanks!
