Error in MultiQC

usegalaxy.eu support
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2

Hi @amir

Few items to check:

  1. Is the MultiQC report input type set to be the same as for your input data content? Meaning, if summarizing FastQC results, that needs to be specified on the MultiQC form. There are many options, and FastQC is not the default.

  2. Inputs need to be in text format. For FastQC these will be the “raw” result datasets, not the “html” datasets.

  3. This prior QA has more details that may help: How do you use MultiQC on FastQC files taken from SRA files?

Check those and if still having problems, post back a screenshot of the MultiQC tool form settings and a screenshot of one of the inputs you selected. We can dig deeper if needed after that.