Hi @jvangoor
Have you changed GenMark settings during the job setup?
The description says:
GeneMark is not a free software, to use it download and unzip a license from GeneMark™ download (ES/ET/EP version). GeneMark needs to be installed manually by Galaxy administrators, it might not be available on this server.
You need a license for this option.
I believe Funannotate works without GenMark, just do not modify options in this section.
Kind regards,
Igor
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