We created a local Galaxy instance in late 2018 by cloning the main public Galaxy and tools were installed using the API. Everything works except that the Tool Pane layout in our Galaxy main page is the outdated version. We really like the layout of the current version of the Tool Pane of the main…

There are two parts in your question: ordering of tools and sections in the tool panel tool panel design Ad 1) The exact ordering and sections of all tools on usegalaxy.org is described in the config file here . You can also have a look on how all usegalaxy.* servers are installing and updating to…

Hi Martin, According to one of your tutorials , the file “integrated_tool_panel.xml” decides the tool panel looks. We have found that this is NOT true: We substituted our existing integrated_tool_panel.xml file with the one of the public main galaxy as you provided After we restarte…

The integrated_tool_panel file decides the ordering of the sections and the tools within the section, but it has nothing to do with what tools are installed/available in your Galaxy. In order to replicate both the ordering and contents of the Main’s tool panel in addition to the integrated_tool_pan…

In addition to what @marten said, you can change the order of sections and tools by modifying integrated_tool_panel.xml but that only works if you change the file when Galaxy is down, otherwise it will be overwritten when Galaxy is stopped/restarted (unless this has changed recently).

Thanks much for your reply, @nsoranzo ! Would it be possible to let us know where can we find the integrated_tool_panel.xml for the current usegalaxy.org ? The link provided by @marten was NOT the current version. Best, USC Libraries Bioinfo Service

Since I also would like to restructure and clean the menu of our instance I would like to ask if you succeeded? Maybe you have further tips? I was wondering if the sections (ids and names) in shed_tool_conf.xml and tool_conf.xml need to be renamed if they are renamed in integrated_tool_panel.xml? C…

@bernt-matthias yes, the sections have to correspond

Galaxy Community Help

Galaxy main page layout

usegalaxy.org support

devops-administration, tool-panel

show post in topic

Home
Categories
Guidelines
Terms of Service
Privacy Policy

Powered by Discourse, best viewed with JavaScript enabled