I run docker image of Galaxy on Ubuntu 24.04.
docker run --name galaxy -d -p 8080:80 -v /path/to/galaxy_storage/:/export/ quay.io/bgruening/galaxy
I logged in as admin and installed several tools including featureCounts.
I loaded a workflow (created in https://usegalaxy.org/) and input data through SRA toolkit and link fetch.
I started the workflow and get an error:
Invocation scheduling failed because an unexpected failure occurred: ‘Tool toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.1.1+galaxy0 missing. Cannot add dummy datasets.’
Reinstalling featureCounts did not help. Do you have any suggestions?