Welcome @horikini
Hopefully we can help! Yes, the tool does appear to be processing as expected UseGalaxy.eu → How to see the UseGalaxy.eu job queue statistics - #2 by jennaj
Updated Homepage
The view on the server homepage changed a bit recently, so this is how the same landmarks are now organized:
GTDB-Tk status
I see about 120 queued jobs right now (seems to range between 110-140 recently), and the server is processing through about 4 of these jobs concurrently at any particular time.
Reference data, node resources, and combined impact on throughput
The reference data is extremely large (as I am sure you know!) and the 4 dedicated nodes are given significant working memory resources as compared to most if not all other tools. Leaving your job(s) queued will be important to keep them competitive for a slot in the processing!
More discussion in these topics have similar advice to this. gtdbtk_classify_wf
And, if you are looking for a workflow, these are our HTP versions from the IWC!
Did this help to explain what is going on and to know what to do? Follow up questions are welcome. 