Help with instructions for running Galaxy in our Institute's cluster.

[Mohanchaitanya]

Hello Galaxy Community,

I need assistance with installing Galaxy on our HPC cluster for metagenomics analysis. I have limited system administration experience and need to set it up in my user account without root access due to our HPC usage policy.

Could you please provide step-by-step instructions or direct me to relevant documentation? Any guidance tailored for HPC environments would be greatly appreciated.

Thank you!

[jennaj]

Hi @Mohanchaitanya

Either of these should be able to work without root as far as I know. The DOCKER Galaxy will be easier to get started up, and has a really nice README.

@jennaj

Local Galaxy

A local Galaxy server is a choice for personal use, and can be scaled to support multiple users.

Your service can be hosted publicly or privately. Connect to local, institutional, or commercial cloud computing resources and customize your usage policies.

Local Galaxy

• Training Network Galaxy server administration training → Learning Pathway
• Technical Documentation Galaxy releases, plus Admin and Development docs
• Open-source code base GalaxyProject Github repositories
• galaxyproject/admins chat at https://matrix.to/#/#galaxyproject_admins:gitter.im
• galaxyproject/admins dev at https://matrix.to/#/#galaxyproject_dev:gitter.im

Docker Galaxy

Much comes pre-configured, and common administrative tasks are simpler to implement and maintain. Be sure to review the repository’s README for these custom instructions.

Docker Galaxy

• Galaxy Docker - Galaxy Community Hub
• bgruening/docker-galaxy-stable chat at https://matrix.to/#/#bgruening_docker-galaxy-stable:gitter.im

Let’s start there!