Hi, I’ve tried to use HISAT2 on some of my Cutadapt output files, however the summary files from HISAT2 are always empty for my 48 files (i.e. 0 lines). I tried re-uploading my data and starting the analysis again, re-running HISAT2 multiple times, and even trying the files on the main galaxy site…

HISAT2 Empty summary file

jennaj October 12, 2023, 5:16pm 2

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