I tried to visualize my aligned files (merged bam, generated with RNA STAR) directly from Galaxy.eu with local IGV, but received the following warning from IGV: Error message: Unknown BAM index file type: null in null. No aligned reads are visualized, of course. I last worked with these same files a month ago, visualization was successful. Might this be a recent problem with Galaxy? Or with IGV? Thanks for your help. Beata
Hi @scholtz
I can reproduce the problem with a local host error.
- https://usegalaxy.eu/u/jenj/h/test-srr11296739-qa-and-mapping → https://usegalaxy.eu/datasets/26c75dcccb616ac8eeedebd5318088da/visualize → see Visualize tab
HI @Gabriel are there any known issues with IGV local for now? Thanks! 