Ive ran a couple of trees using the same steps shown in this history successfully however for this specific SRA the tree gave an error output.
Could someone help me figure out what went wrong or what the next steps are to fix this error.
the error message is somewhat confusing:
ERROR: Alignment sequence tr|D5G3Q3|D5G3Q3_SUBDO does not appear in the tree
I don’t see any issue with the file. Can be a transient server-related error. As a check I copied the file to another server and completed iq-tree job:
This history will be unshared at some point.
I completed iq tree job on the main Galaxy server using your data. It does look like a transient error, such as temporary storage issue. I deleted the test history on Galaxy Australia. Just resubmit the job.