Hi @ccoulombe
I didn’t know this was for UseGalaxy.ca!! Welcome aboard. I’ll send you a direct message with more about this.
Then, for the Kraken2 indexes, yes, once the DM is corrected, the IDC will be able to generate the indexes into CVMFS and your server can inherit them, layering in consistency between the UseGalaxy servers (aspirational, so your decision of course!).
Some updates are already requested and I just added this new one in.
- IDC link GitHub · Where software is built
- New item Update Kraken2 + Braken indexes for July 2025 and October 2025 updates · Issue #82 · galaxyproject/idc · GitHub
- With search term against Issues “kraken” to see all related GitHub · Where software is built
Next time, or even this time, you are welcome to join into the development directly as the starting point. If you notice some issue with a tool wrapper, follow the links to the source code and propose changes in a PR or open an Issue ticket for discussion. Then you can link that back into discussions here if you notice something or want to create a topic for end-users to find – especially of the item impacts all servers.
In short – two steps: 1) update a DM to incorporate new data, then 2) to use the DM to get the data into the shared mount. Often it is just the second step and less common there isn’t a DM (yet).