I see that there is an datamangers for kraken2 to install Minikraken2. Now I am able to install Minikraken2 but it doent contain all the required files to finish the job.
taxo.k2d file is missing.
Fatal error: Exit code 2 ()
Possible unintended interpolation of @2 in string at /dep/_conda/envs/__kraken2@2.0.7_beta/bin/kraken2 line 16.
kraken2: database ("/tool/tool-data/kraken2_databases/2019-05-07T122927Z_minikraken2_v2_8GB") does not contain necessary file taxo.k2d
Thanks,
Jayanthi