Hi, I’m trying to run maaslin2 and maaslin3 in http://galaxy.biobakery.org/ without any luck. Maaslin2 error says error
An error occurred with this dataset:
[1] “Creating output feature tables folder” [1] “Creating output fits folder” [1] “Creating output figures folder” 2025-09-16 00:36:34.14202 INFO::Writing function arguments to log file 2025-09-16 00:36:34.159861 INFO::Verifying options selected are vali…
Maaslin3 error is about the id column, but there’s no option to selected subject Id.
I’m also using the datasets provided for each tool. Any help is welcome!
jennaj
September 16, 2025, 11:46pm
2
Welcome @tasha.santiago.bcm
The administrators who run this server host custom tools and their own dedicated support forum (and don’t track this one). Also, if there is this some current server-side issue, they will also know about the status.
Alternative support forums
When working at certain Galaxy sites, questions are best asked at the places the scientists who run the server host discussions. They can also let you know if there happen to be any current technical problems that may be impacting your analysis. These are the ones we know about.
Galaxy.bioBakery.org https://forum.biobakery.org Galaxy , and prior Q&A here is tagged galaxy-huttenhower
I would suggest searching recent Q&A first to see if there is a known issue, then starting up a new topic if needed. I hope this works out!
