@Ghazal_Aziz – To be clear, the make.contigs job is ending with a failed red error dataset?
Three things to help troubleshoot:
- If you post back the content from the bug report message and the
stdoutplusstderrwe can try to help that way. How to find that information: Galaxy Training! - When you post back, please include the URL of the public Galaxy server you are working at. If not at a public site, please describe. This is to confirm – the server may matter in some cases (see note below).
- Sending in a bug report would also be helpful. Include a link to this topic in the comments so we can associate the two.
Note: If you are working at usegalaxy.org, a rerun might solve the problem. We are migrating data to a new storage system, and a very small fraction of jobs may fail for technical reasons. A rerun usually addresses that particular problem. And, for certain tools, inputting uncompressed fastqsanger data will work when compressed fastasanger.gz originally fails. The banner on the server has more details, as does this topic: Long queue times at UseGalaxy.org 9/27/2021: Please allow jobs to stay queued for fastest processing