I successfully added a new datatype to galaxy named
zipnobam. I did this to restrict the input/output of a set of tools. When I download this output file the file will get the extension .zipnobam.
Is it possible to have the datatype
zipnobam inside galaxy but when I download the file it will have the .zip extension?
I can also do something like
nobam.zip which will end in
filename.nobam.zip but I would still prefer
filename.zip if possible.
I solved it (for now) by adding the following code in galaxy/lib/galaxy/datatypes/data.py under
if to_ext == "nobam.zip": to_ext = "zip"
Of course if there is a better solution let me know