Can I request Genome scaffolder on galaxy?

:partying_face: UPDATES!! The VGP Project is happening at the UseGalaxy servers! Read about the project here :rocket: The Vertebrate Genomes Project in Galaxy - Galaxy Community Hub Be sure to see the new tutorials in the :graduation_cap: GTN at Learning Pathways and see the Categories for Assemb…

Hello @Rahul_Shelke New wrapped tool requests can be made to the IUC by creating a ticket here: GitHub - galaxyproject/tools-iuc: Tool Shed repositories maintained by the Intergalactic Utilities Commission Or, you can vet the request first at their Matrix channel here. Someone may already be worki…

Hi Jennifer, These tools are available on some galaxies, but they are not working properly. I shared the error with admins but not got any reply from them. Regards rahul

@Rahul_Shelke What is the full tool name, including version? I didn’t find it in the Main ToolShed https://usegalaxy.org/toolshed and some public Galaxy servers will write/host custom tools and not publish them there. But we can double-check that I didn’t miss it. What public Galaxy servers is t…

Dear Jennifer, Following are the name of tools available in the Main ToolShed https://usegalaxy.org/toolshed (Assembly section). Abyss 2. Sspace 3. Sopra Moreover, Abyss also available on http://biomaster.atica.um.es:8080/ https://orione.crs4.it/ Sopra, https:…

Right – not all tools are available on all servers. This is usually because of the particular resources different public servers have. These tools all fail, at all of the servers you listed? Or, these are not the tool you want to use? I’ve lost track of what you are asking for.

Dear Jennifer, Following are the issues associated with running listed tools on other public galaxies . These tools are not maintained. Not enough space on that galaxies. Job are running for month but not getting finished. No option of error report sharing. Etc Due to these all colle…

@Rahul_Shelke Thanks for explaining. All of these tools require significant computational resources. Too much for the usegalaxy.* public Galaxy servers (why we do not host them) and it sounds like in your case, too much for the other public servers you tried as well. The exception, Sopra, hosted at…

ABySS has been removed. [image] ABySS fungal de novo genome assembly: Update, ABySS removed from usegalaxy.org, alternative usegalaxy.eu Update The assembler ABySS has been technically problematic at UseGalaxy.org for some time now. The tool has been removed from UseGalaxy.org . An alternative…

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New wrapped tool request for the IUC or Finding existing wrapped tools. Example: genome scaffolder

jennaj January 13, 2021, 12:53am 9

ABySS has been removed.