Output of Manta tool

[Wenjing]

I ran Manta tool to analyse insertions/deletions in my DNA sample. Although the Help claims that Manta outputs are 3 VCF files, I only recieve one ini file. Does anybody have a idea why I can’t see these VCF files?

[wm75]

Hi @Wenjing,

I think you need to enable them with these three switches:

[Wenjing]

Hi Wolfgang,

vielen Dank! Es funktioniert jetzt.

Gruss,

Wenjing

[wm75]

Sehr schön

Danke für’s bescheid geben und viele Grüße auch,

Wolfgang

[Wenjing]

Thanks a lot! It works now!