I have about 5000 variants on one chromosome that I would like to phase in a few families. I have the data from NGS in a tab delimited format. Can this be done with Galaxy tools?
Beagle seems to the most suitable tool for performing such analysis, but currently is it not available in Galaxy; If you consider it appropriate (or have any other suggestion) it can be included.
thanks a lot for your reply. I would find this application very useful, however I am not sure if you need to reach a ‘critical mass’ of interest before introducing new tools to Galaxy… thanks for considering!
I’ll work on it, doesn’t seem a very complex tool to implement; I will try to make it available for next week.
Wow, that’s amazing thanks @gallardoalba !
Hello @gallardoalba, I was wondering if you ware able to implement the Beagle to galaxy… thank you,
thanks so much!