Hi everyone, I am unable to prepare Phyloseq R object from biome file for data visualization in Shinyphyloseq tool. I am able to create phyloseq object but after this step, it is showing error. I am sharing my history, Can anyone help me out for this :slight_smile: Galaxy Thanks, Shweta

Hi @Shweta.203 Yes, there is a known issue with Phyloseq at the UseGalaxy.org server. We are still working on a correction. For now, you can use the UseGalaxy.eu server instead. You can move data directly between servers whenever you need to. More details in the ticket. Correct tool_id interactive_…

Phyloseq R object from Biom FILE

jennaj November 15, 2024, 9:36pm 3

Oh, that was your question! You can keep following up in the same thread for the same issue. Thanks!

XRef PhyloseqR not showed up, not working

Topic		Replies	Views
Need help to run Phyloseq in Galaxy to characterize microbial taxa usegalaxy.org.au support tool-help , qiime2 , interactive_tool_phyloseq	2	63	September 17, 2024
How to solve the error "there is no R package" when I tried to install my own R script on the docker galaxy container. tool-dev , planemo	2	10	March 31, 2025
make_phylogeny tools fails to run usegalaxy.eu support qiime2 , evolution	3	158	January 25, 2024
Microbiome Global Picture Phinch BIOM1 format metagenomics , microgalaxy	3	13	December 16, 2024
Phinch visualization & tool not found usegalaxy.org support	2	854	September 16, 2019

Phyloseq R object from Biom FILE

Related topics