Dear community, i run meryl for k-mer coverage counting due to the following workflow: Galaxy | Europe | Accessible Workflow | Kcov . When doing so with a paired end Illumina dataset it first work well, i got results. When repating the same workflow with more data the job does not failed (no erro…

Hi @fruitphytodoc , the error seems to be related to the compressed files; I opened an issue about it Meryl: wrong outputs with compressed FASTQ files · Issue #3801 · galaxyproject/tools-iuc · GitHub . Could you try to decompress the fastq.gz files and relaunch the analysis? You can uncompress your f…

Possible error in meryl

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jennaj Split this topic April 19, 2023, 9:51pm 6

A post was split to a new topic: Meryl troubleshooting

Topic		Replies	Views
Meryl troubleshooting usegalaxy.org.au support assembly , exceeds-memory-error , single-cell , evolution	1	488	April 19, 2023
CheckM lineage_wf usegalaxy.org support tool-help , checkm_lineage_wf	3	35	February 4, 2025
Workflow Errors usegalaxy.org support workflow	2	627	September 28, 2020
Job errors at Galaxy Main https://usegalaxy.org -- status and updates usegalaxy.org support server-side-error	3	965	May 17, 2019
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Possible error in meryl

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