Hello,
I am having trouble with a Bioblend script to use a workflow developed on Galaxy.
My workflow interconnects Colabfold MSA and Colabfold AlphaFold. Everything is going well except that for the last part. I am unable to retrieve the job’s progress status and therefore know when it is finished.
If you have any ideas, a script I can use, etc., any help would be greatly appreciated
And happy new year !
Hopefully we can help!
Guides. →
An example for checking the state of the datasets in a history here. →
All datasets have a few status that can be assigned, then those may have more details eg empty or not. A dataset representing an output starts off as new, then queued. Then, while executing, this changes to running. When completed, ok and failed give the successful/not status.
Are you using this method? A direct API call would require you to already know the history number or dataset number to query. These will be different every time the workflow is invoked.
If you need more help, would you like to explain more about how you are making the query? We may be able to spot the problem and offer more specific advice.
Let’s start there, thanks! 