I want to run Racon on Canu output files. It is my first time running this pipeline, hence I have a few basic questions:
- For Racon’s “Overlap” field, which file of Canu should be used?
- I see that all outputs of Canu are in fasta format. But Racon needs the input format in MHAP/PAF/SAM for “Overlap” field. Do I need to change the file format? If yes, which format should I use?