This advice will apply to you as well, @sfathim
The servers have different queues, so one may be “faster” than the other, overall or just for some tools, but they are each still processing tens of thousands of jobs everyday. Work will queue first, then execute, and this is expected.
Since yours has been a few days already, and because Salmon is such a complicated tool to use, would like like to share back your work for review? To make sure more is not going on? You can also review prior troubleshooting here Search results for 'salmon' - Galaxy Community Help but please ask for help if you are still stuck!
I’ll watch for your reply, thanks! 