Alignment file missing in ROARY

[jennaj]

Welcome, @Ismam_Ahmed_Protic

This prior reply has information about what we know about this type of error.

@jennaj

Someone else recently posted about this here: Problems with roary output

And prior help is in here: roary core genome alignment file is empty. (resolved) - #7 by jennaj

So, one of these is going on:

1. the job is “too large” for the public servers
2. the input files are not named in a way that Roary can use

If you want to share your example we can try to help more.

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What to do:

1. Please review those links, then your inputs.
2. Consider posting back your job details for help to confirm what is going on. See the banner at this site for the how-to, or see
   • Troubleshooting resources for errors or unexpected results
   • How to get faster help with your question
3. The basic usage is about the same when running the tool in Galaxy, so this may help too Roary: the pan genome pipeline

Let’s start there, thanks!