Alignment file missing in ROARY

I am analyzing 321 genome but not getting the alignment file. I have tried different versions of ROARY and with varying changes in the maximum number of clusters.
Can you help me with it?

Welcome, @Ismam_Ahmed_Protic

This prior reply has information about what we know about this type of error.

What to do:

  1. Please review those links, then your inputs.
  2. Consider posting back your job details for help to confirm what is going on. See the banner at this site for the how-to, or see
  3. The basic usage is about the same when running the tool in Galaxy, so this may help too Roary: the pan genome pipeline

Let’s start there, thanks! :slight_smile:

Do you get other outputs from ROARY ? And only the alignment file is missing ?