Annotate VCF with gene names

[jennaj]

Hello @yahia.elshabrawy

Yes, Annovar at https://usegalaxy.org is currently non-functional. The tool will likely be deprecated: Annovar -- complete fixup for Py3 on Main · Issue #284 · galaxyproject/usegalaxy-playbook · GitHub

Alternative VCF annotation tools can be found in the tool grouping “Variant Calling”. SnpEff is one example.

GTN Tutorials may help with usage and creating a workflow. Start with those under the topic “Variant Analysis”.

@jennaj

Galaxy Training Network Tutorials : Some GTN tutorials are appropriate for Galaxy Main and some are not. Where you can run each is noted per tutorial – click on the Galaxy instances gear icon to review the Public Galaxy server choices. If a tutorial is supported by a pre-configured Galaxy Docker training image, instructions for how to get it will be listed below the tutorial listings, per category.

Hope that helps!