Hello, I have two (maybe stupid questions). I have ATAC seq data from multiple groups each 3 replicates. How can I reach the normalization like in IDR (high confidence set) of the narrow peak files for 3 replicates? Is DiffBind working for multiple group comparisons? I tried to click on the inser…

Welcome @OmarMossad Sorry for the delayed reply. Try reviewing your methods to those in the GTN tutorial that covers ATAC-seq analysis: [image] ATAC-seq analysis and tutorial Hi there, I’m following the tutorial for ATAC-seq analysis for the platform. They use Genrich …

ATAC-seq analysis

jennaj Split this topic December 4, 2024, 6:34pm 3

A post was split to a new topic: ATAC-seq data analysis tutorial: troubleshooting

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ATAC-seq analysis

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