I have two (maybe stupid questions). I have ATAC seq data from multiple groups each 3 replicates.
- How can I reach the normalization like in IDR (high confidence set) of the narrow peak files for 3 replicates?
- Is DiffBind working for multiple group comparisons? I tried to click on the insert group button but it doesn’t work. Is there another tool/flow that you would recommend for multiple group comparisons?
Thanks for the help