i done bcftools view, with filter option -2 to filter biallelic variants.but its showing 0 lines

More details in consolidated post. [image] Galaxy variant calling i m using galaxy for variant calling.i want to get biallelic variants and synonymous and non synonymous snps.how to filter it.what are the steps?

Hi @Praseedas You can share your work for more feedback from the community. If you are following a tutorial already, please also share a link to which one for context. Troubleshooting resources for errors or unexpected results How to get faster help with your question Instructions for these mani…

bcftools view problem

jennaj May 20, 2024, 7:13pm 2