Hi, i want to use Kraken2 and next Bracken, i have noticed that in Bracken there aren’t all the kmer distribution with the same name of the database available in kraken2, for example in kraken2 can be selected the “core nt database”, but in Bracken there isn’t kmer distribution named “core nt”. If i use a database in kraken2 but another kmer distribution what will be the impact on the results?
Hello @AleMoxy
Some of the databases were recently added and we are still working to add them to the other tools. For now, if this is your workflow, try to use the databases that are already supported in each. Thanks! 