[image] : When running BRAKER3 for genome annotation on Galaxy Europe, the job fails with: Error: "Genemark is not installed properly on this Galaxy server." Upload genome (FASTA) and protein-seq data. Run BRAKER3 with default parameters. Job crashes during execution. Expected vs. Actual Behavi…

Welcome, @jing666 Correct, the Genmark annotation is proprietary and cannot be hosted at the public Galaxy servers. The tool wrappers are designed to support the extra annotation when run in a private environment. This is true with the Braker3 tool and others that can incorporate the annotation. …

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BRAKER3 fails with 'Genemark not installed' error

usegalaxy.eu support

reference-annotation, tool-help, genmark, braker3, genemark

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