Converting Transcript Id with Ensemble or Entraz ID ?

@jennaj I solved the problem ive mentioned in the last reply, But still have this :slightly_smiling_face: (shared in this link)

https://usegalaxy.eu/u/amir/h/memar

Error in .rowNamesDF<-(x, value = value) :
missing values in ‘row.names’ are not allowed
Calls: row.names<- -> row.names<-.data.frame -> .rowNamesDF<-

The mapping may not be 1-1.

I would suggest using the Entrez IDs directly from Featurecounts instead to ensure distinct geneIDs. Then, at the end, you can convert those IDs to Ensembl for other purposes you may have.

Follow the tutorial, it will help to avoid problems like this.

Finally its done @jennaj thanks for your supportive and kind response

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How do I remove the .plus version from gene ids

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Missed the question, but for others reading, please see:

2 posts were split to a new topic: Using GOSEQ with a custom category input