Converting Transcript Id with Ensemble or Entraz ID ?

[amir]

@jennaj I solved the problem ive mentioned in the last reply, But still have this (shared in this link)

https://usegalaxy.eu/u/amir/h/memar

Error in .rowNamesDF<-(x, value = value) :
missing values in ‘row.names’ are not allowed
Calls: row.names<- -> row.names<-.data.frame -> .rowNamesDF<-

[jennaj]

The mapping may not be 1-1.

I would suggest using the Entrez IDs directly from Featurecounts instead to ensure distinct geneIDs. Then, at the end, you can convert those IDs to Ensembl for other purposes you may have.

Follow the tutorial, it will help to avoid problems like this.

[amir]

Finally its done @jennaj thanks for your supportive and kind response

[ayushirehman]

How do I remove the .plus version from gene ids

[jennaj]

Missed the question, but for others reading, please see:

how to replace these ID with official gene names?

Hi - Since the identifier is in the first column, Text transformation with sed will work without a complex expression. Try this: s/\.[0-9]+// Other options include using regular expressions with tools like: Text reformatting with awk Replace parts of text Replace Text in entire line Replace Text in a specific column Or, if you don’t want to use a regular expression, the column can be isolated, the “dot” replaced with a “tab”, then all the data rearranged back again into one file. This coul…