I am new to Galaxy. I developed a tool wherein I am storing the output (multiple files) of the tool after it finishes running into a directory which I create during runtime (the directory name has the following format: <system_time_in_milliseconds>_<random_5_digit_number>).
Now my main aim is, how can I get the name of the directory created during runtime in my XML code. Also, how can I set the output of the tool in the XML file to point to the contents of the directory.
I did look into the documentation, the tag has an attribute from_work_dir, can you please provide me with an example of how to use this.
My XML File Looks like this:
<tool id="tool1" name="tool1" version="1.0.0"> <command detect_errors="exit_code"><![CDATA[ python3 $__tool_directory__/python_script_file.py $input1 firstname.lastname@example.org -s $input1 -m GTRGAMMA -f d -N 500 ]]></command> <inputs> <param type="data" format="data" name="input1" label="Input file"/> </inputs> <outputs> <data name="output1" from_work_dir="<don't know what to put here>"/> </outputs> <help> Tool </help> </tool>