Hi @Mohanchaitanya I’m following up about this tool. I reran both tool tests, and had the same result. My run with the gene name option toggle created the same message as your run that also used that option, and I can see the setting in your shared workflow.
Importantly, the test data didn’t include those extra annotation fields. You could also check your output. The upstream tool Dram annotate is what can add those into the tabular annotation output. I not exactly sure which of the three annotation options on the form (UniRef, VOGDB, kofam) adds in those values, or if it is a different toggle, so I started up a test against all three. We can inspect the output to see what happens. These are in the same test history above and I tagged each test.
This is the guide from the tool author I am following → 3a. Running DRAM · WrightonLabCSU/DRAM Wiki · GitHub
Now, while you can supply your own annotation files, it would be nicer to have the native indexes. I’ve requested this at → Request: add native indexes for the DRAM suite of tools · Issue #1562 · usegalaxy-eu/infrastructure-playbook · GitHub
Apologies for the delays. Most of the team was involved with our recent release and yearly conference but we are back now. 
Let’s get this working for you!