Error in Qualimap RNA-seq QC

@clsven
UPDATE: The smaller datasets completed running ok in the .org instance, although it took much more time to start/complete. The bigger one is still running on .org.
Also there are interesting differences about the org/eu runs:

  • Eu

has Command Line and Tool Standard Output text; Tool Standard Error empty:

  • Org

has Command Line empty, but has Tool Standard Output and Tool Standard Error text:

Output values are the same:

  • Eu
Reference size 12,567,654
Number of reads 267,167
Mapped reads 267,167 / 100%
Unmapped reads 0 / 0%
Mapped paired reads 0 / 0%
Secondary alignments 0
Supplementary alignments 1,737 / 0.65%
Read min/max/mean length 30 / 151 / 94.83
Overlapping read pairs 0 / 0%
Duplicated reads (flagged) 0 / 0%
Duplicated reads (estimated) 48,903 / 18.3%
Duplication rate 16.42%
Clipped reads 143,727 / 53.8%
  • Org
Reference size 12,567,654
Number of reads 267,167
Mapped reads 267,167 / 100%
Unmapped reads 0 / 0%
Mapped paired reads 0 / 0%
Secondary alignments 0
Supplementary alignments 1,737 / 0.65%
Read min/max/mean length 30 / 151 / 94.83
Overlapping read pairs 0 / 0%
Duplicated reads (flagged) 0 / 0%
Duplicated reads (estimated) 48,903 / 18.3%
Duplication rate 16.42%
Clipped reads 143,727 / 53.8%