Update
Everything should be updated now. Please try a rerun if still having problems.
Hi @David
The two outputs are from different versions of the tool. Both servers do not have the most currently updated tool versions for every tool in the suite (last change a bit over a week ago for this one: https://toolshed.g2.bx.psu.edu/view/iuc/qualimap_bamqc/19ece8afbaab, plus others like https://toolshed.g2.bx.psu.edu/view/iuc/qualimap_rnaseq/43a1c3e1a4d0 are at different versions between the two servers).
I’ve contacted both admins about updating. This will happen in the near term. And the updated versions may resolve some of the problems reported (changes are mostly bug fixes + additional tool tests, and not all in the suite were updated, just a few of the tools).
Also, some reported metrics on the Job Details page can vary by Galaxy server. This may be due to admin settings, cluster types, or the version of Galaxy itself the server is running. Org has been upgraded to the pre-release of 21.05 (for testing). Eu is at the master 21.01 release. Releases — Galaxy Project 21.05.1.dev0 documentation
I’m going to bookmark this for an update. Plan to retest it all once updated – or may report the update and let people rerun to see if fixes their specific use case. If I don’t get back within a week or so, feel free to ping for an status update.
Thanks!