I’m using mirdeep2 for analysis of human miRNA data and in this tool, the input requirements of this tool is 2 files from mirdeep2 quantifier, mature.fa and precursor.fa from mirBase and a coresponding genome fasta file. i am not sure which type of file this is? is this reference genome of humans i…

Hi @maham_hamid & thanks for posting this to the forum! In short, for these tools, as installed at https://usegalaxy.eu : MiRDeep2 identification of novel and known miRNAs does not make use of the general indexed reference genomes (and probably could/should) MiRDeep2 Mapper process and map rea…

i used the reference genome i.e hg38 but it came up with an erorr with no explanation. can anyone help me ?

Duplicate, question is now in this post: [image] MiRDeep2 identification of novel and known miRNAs usegalaxy.eu support Hi After i done Mirdeep2 mapper and quantifier, in Mirdeep2 identifier i got an error which i think the genome was the problem. what should i put i tha…

Fasta format genome file in mirdeep2 (custom genome)

usegalaxy.eu support

jennaj September 4, 2019, 6:05pm 4

Duplicate, question is now in this post: