FastQC perl warning

usegalaxy.eu support
1

Hello, since last week I am receiving this error for fastqc analysis. The datasets and this workflow previously were working alright when I was running them. It seems that this is the issue from Galaxy side, does anybody know a workaround it?

/bin/bash: warning: setlocale: LC_ALL: cannot change locale (C.UTF-8)
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
	LANGUAGE = (unset),
	LC_ALL = "C.UTF-8",
	LANG = "C"
    are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
javax.imageio.IIOException: Can't create cache file!
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:361)
	at java.desktop/javax.imageio.ImageIO.read(ImageIO.java:1409)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.base64ForIcon(HTMLReportArchive.java:379)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.startDocument(HTMLReportArchive.java:303)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:84)
	at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
	at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
	at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.nio.file.FileSystemException: /tmp/imageio16627367062320341509.tmp: Read-only file system
	at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:100)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116)
	at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215)
	at java.base/java.nio.file.Files.newByteChannel(Files.java:370)
	at java.base/java.nio.file.Files.createFile(Files.java:647)
	at java.base/java.nio.file.TempFileHelper.create(TempFileHelper.java:137)
	at java.base/java.nio.file.TempFileHelper.createTempFile(TempFileHelper.java:160)
	at java.base/java.nio.file.Files.createTempFile(Files.java:912)
	at java.desktop/javax.imageio.stream.FileCacheImageInputStream.<init>(FileCacheImageInputStream.java:102)
	at java.desktop/com.sun.imageio.spi.InputStreamImageInputStreamSpi.createInputStreamInstance(InputStreamImageInputStreamSpi.java:69)
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:357)
	... 7 more
javax.imageio.IIOException: Can't create cache file!
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:361)
	at java.desktop/javax.imageio.ImageIO.read(ImageIO.java:1409)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.base64ForIcon(HTMLReportArchive.java:379)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.startDocument(HTMLReportArchive.java:347)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:84)
	at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
	at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
	at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.nio.file.FileSystemException: /tmp/imageio833373509863889356.tmp: Read-only file system
	at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:100)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116)
	at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215)
	at java.base/java.nio.file.Files.newByteChannel(Files.java:370)
	at java.base/java.nio.file.Files.createFile(Files.java:647)
	at java.base/java.nio.file.TempFileHelper.create(TempFileHelper.java:137)
	at java.base/java.nio.file.TempFileHelper.createTempFile(TempFileHelper.java:160)
	at java.base/java.nio.file.Files.createTempFile(Files.java:912)
	at java.desktop/javax.imageio.stream.FileCacheImageInputStream.<init>(FileCacheImageInputStream.java:102)
	at java.desktop/com.sun.imageio.spi.InputStreamImageInputStreamSpi.createInputStreamInstance(InputStreamImageInputStreamSpi.java:69)
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:357)
	... 7 more
javax.imageio.IIOException: Can't create cache file!
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:361)
	at java.desktop/javax.imageio.ImageIO.read(ImageIO.java:1409)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.base64ForIcon(HTMLReportArchive.java:379)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.startDocument(HTMLReportArchive.java:347)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:84)
	at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
	at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
	at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.nio.file.FileSystemException: /tmp/imageio8547169514027313621.tmp: Read-only file system
	at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:100)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116)
	at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215)
	at java.base/java.nio.file.Files.newByteChannel(Files.java:370)
	at java.base/java.nio.file.Files.createFile(Files.java:647)
	at java.base/java.nio.file.TempFileHelper.create(TempFileHelper.java:137)
	at java.base/java.nio.file.TempFileHelper.createTempFile(TempFileHelper.java:160)
	at java.base/java.nio.file.Files.createTempFile(Files.java:912)
	at java.desktop/javax.imageio.stream.FileCacheImageInputStream.<init>(FileCacheImageInputStream.java:102)
	at java.desktop/com.sun.imageio.spi.InputStreamImageInputStreamSpi.createInputStreamInstance(InputStreamImageInputStreamSpi.java:69)
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:357)
	... 7 more
javax.imageio.IIOException: Can't create cache file!
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:361)
	at java.desktop/javax.imageio.ImageIO.read(ImageIO.java:1409)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.base64ForIcon(HTMLReportArchive.java:379)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.startDocument(HTMLReportArchive.java:347)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:84)
	at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
	at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
	at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.nio.file.FileSystemException: /tmp/imageio15996489077147864827.tmp: Read-only file system
	at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:100)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116)
	at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215)
	at java.base/java.nio.file.Files.newByteChannel(Files.java:370)
	at java.base/java.nio.file.Files.createFile(Files.java:647)
	at java.base/java.nio.file.TempFileHelper.create(TempFileHelper.java:137)
	at java.base/java.nio.file.TempFileHelper.createTempFile(TempFileHelper.java:160)
	at java.base/java.nio.file.Files.createTempFile(Files.java:912)
	at java.desktop/javax.imageio.stream.FileCacheImageInputStream.<init>(FileCacheImageInputStream.java:102)
	at java.desktop/com.sun.imageio.spi.InputStreamImageInputStreamSpi.createInputStreamInstance(InputStreamImageInputStreamSpi.java:69)
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:357)
	... 7 more
javax.imageio.IIOException: Can't create cache file!
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:361)
	at java.desktop/javax.imageio.ImageIO.read(ImageIO.java:1409)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.base64ForIcon(HTMLReportArchive.java:379)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.startDocument(HTMLReportArchive.java:347)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:84)
	at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
	at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
	at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.nio.file.FileSystemException: /tmp/imageio1059860329545408705.tmp: Read-only file system
	at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:100)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116)
	at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215)
	at java.base/java.nio.file.Files.newByteChannel(Files.java:370)
	at java.base/java.nio.file.Files.createFile(Files.java:647)
	at java.base/java.nio.file.TempFileHelper.create(TempFileHelper.java:137)
	at java.base/java.nio.file.TempFileHelper.createTempFile(TempFileHelper.java:160)
	at java.base/java.nio.file.Files.createTempFile(Files.java:912)
	at java.desktop/javax.imageio.stream.FileCacheImageInputStream.<init>(FileCacheImageInputStream.java:102)
	at java.desktop/com.sun.imageio.spi.InputStreamImageInputStreamSpi.createInputStreamInstance(InputStreamImageInputStreamSpi.java:69)
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:357)
	... 7 more
javax.imageio.IIOException: Can't create cache file!
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:361)
	at java.desktop/javax.imageio.ImageIO.read(ImageIO.java:1409)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.base64ForIcon(HTMLReportArchive.java:379)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.startDocument(HTMLReportArchive.java:347)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:84)
	at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
	at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
	at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.nio.file.FileSystemException: /tmp/imageio1491230582461828411.tmp: Read-only file system
	at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:100)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116)
	at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215)
	at java.base/java.nio.file.Files.newByteChannel(Files.java:370)
	at java.base/java.nio.file.Files.createFile(Files.java:647)
	at java.base/java.nio.file.TempFileHelper.create(TempFileHelper.java:137)
	at java.base/java.nio.file.TempFileHelper.createTempFile(TempFileHelper.java:160)
	at java.base/java.nio.file.Files.createTempFile(Files.java:912)
	at java.desktop/javax.imageio.stream.FileCacheImageInputStream.<init>(FileCacheImageInputStream.java:102)
	at java.desktop/com.sun.imageio.spi.InputStreamImageInputStreamSpi.createInputStreamInstance(InputStreamImageInputStreamSpi.java:69)
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:357)
	... 7 more
javax.imageio.IIOException: Can't create cache file!
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:361)
	at java.desktop/javax.imageio.ImageIO.read(ImageIO.java:1409)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.base64ForIcon(HTMLReportArchive.java:379)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.startDocument(HTMLReportArchive.java:347)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:84)
	at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
	at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
	at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.nio.file.FileSystemException: /tmp/imageio14724246229681767374.tmp: Read-only file system
	at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:100)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116)
	at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215)
	at java.base/java.nio.file.Files.newByteChannel(Files.java:370)
	at java.base/java.nio.file.Files.createFile(Files.java:647)
	at java.base/java.nio.file.TempFileHelper.create(TempFileHelper.java:137)
	at java.base/java.nio.file.TempFileHelper.createTempFile(TempFileHelper.java:160)
	at java.base/java.nio.file.Files.createTempFile(Files.java:912)
	at java.desktop/javax.imageio.stream.FileCacheImageInputStream.<init>(FileCacheImageInputStream.java:102)
	at java.desktop/com.sun.imageio.spi.InputStreamImageInputStreamSpi.createInputStreamInstance(InputStreamImageInputStreamSpi.java:69)
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:357)
	... 7 more
javax.imageio.IIOException: Can't create cache file!
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:361)
	at java.desktop/javax.imageio.ImageIO.read(ImageIO.java:1409)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.base64ForIcon(HTMLReportArchive.java:379)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.startDocument(HTMLReportArchive.java:347)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:84)
	at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
	at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
	at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.nio.file.FileSystemException: /tmp/imageio3649339445034848328.tmp: Read-only file system
	at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:100)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116)
	at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215)
	at java.base/java.nio.file.Files.newByteChannel(Files.java:370)
	at java.base/java.nio.file.Files.createFile(Files.java:647)
	at java.base/java.nio.file.TempFileHelper.create(TempFileHelper.java:137)
	at java.base/java.nio.file.TempFileHelper.createTempFile(TempFileHelper.java:160)
	at java.base/java.nio.file.Files.createTempFile(Files.java:912)
	at java.desktop/javax.imageio.stream.FileCacheImageInputStream.<init>(FileCacheImageInputStream.java:102)
	at java.desktop/com.sun.imageio.spi.InputStreamImageInputStreamSpi.createInputStreamInstance(InputStreamImageInputStreamSpi.java:69)
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:357)
	... 7 more
javax.imageio.IIOException: Can't create cache file!
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:361)
	at java.desktop/javax.imageio.ImageIO.read(ImageIO.java:1409)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.base64ForIcon(HTMLReportArchive.java:379)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.startDocument(HTMLReportArchive.java:347)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:84)
	at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
	at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
	at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.nio.file.FileSystemException: /tmp/imageio4449770990674907025.tmp: Read-only file system
	at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:100)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116)
	at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215)
	at java.base/java.nio.file.Files.newByteChannel(Files.java:370)
	at java.base/java.nio.file.Files.createFile(Files.java:647)
	at java.base/java.nio.file.TempFileHelper.create(TempFileHelper.java:137)
	at java.base/java.nio.file.TempFileHelper.createTempFile(TempFileHelper.java:160)
	at java.base/java.nio.file.Files.createTempFile(Files.java:912)
	at java.desktop/javax.imageio.stream.FileCacheImageInputStream.<init>(FileCacheImageInputStream.java:102)
	at java.desktop/com.sun.imageio.spi.InputStreamImageInputStreamSpi.createInputStreamInstance(InputStreamImageInputStreamSpi.java:69)
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:357)
	... 7 more
javax.imageio.IIOException: Can't create cache file!
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:361)
	at java.desktop/javax.imageio.ImageIO.read(ImageIO.java:1409)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.base64ForIcon(HTMLReportArchive.java:379)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.startDocument(HTMLReportArchive.java:342)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:84)
	at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
	at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
	at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.nio.file.FileSystemException: /tmp/imageio14651876806051964957.tmp: Read-only file system
	at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:100)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116)
	at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215)
	at java.base/java.nio.file.Files.newByteChannel(Files.java:370)
	at java.base/java.nio.file.Files.createFile(Files.java:647)
	at java.base/java.nio.file.TempFileHelper.create(TempFileHelper.java:137)
	at java.base/java.nio.file.TempFileHelper.createTempFile(TempFileHelper.java:160)
	at java.base/java.nio.file.Files.createTempFile(Files.java:912)
	at java.desktop/javax.imageio.stream.FileCacheImageInputStream.<init>(FileCacheImageInputStream.java:102)
	at java.desktop/com.sun.imageio.spi.InputStreamImageInputStreamSpi.createInputStreamInstance(InputStreamImageInputStreamSpi.java:69)
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:357)
	... 7 more
javax.imageio.IIOException: Can't create cache file!
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:361)
	at java.desktop/javax.imageio.ImageIO.read(ImageIO.java:1409)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.base64ForIcon(HTMLReportArchive.java:379)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.startDocument(HTMLReportArchive.java:342)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:84)
	at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
	at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
	at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.nio.file.FileSystemException: /tmp/imageio13668874537943024663.tmp: Read-only file system
	at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:100)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116)
	at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215)
	at java.base/java.nio.file.Files.newByteChannel(Files.java:370)
	at java.base/java.nio.file.Files.createFile(Files.java:647)
	at java.base/java.nio.file.TempFileHelper.create(TempFileHelper.java:137)
	at java.base/java.nio.file.TempFileHelper.createTempFile(TempFileHelper.java:160)
	at java.base/java.nio.file.Files.createTempFile(Files.java:912)
	at java.desktop/javax.imageio.stream.FileCacheImageInputStream.<init>(FileCacheImageInputStream.java:102)
	at java.desktop/com.sun.imageio.spi.InputStreamImageInputStreamSpi.createInputStreamInstance(InputStreamImageInputStreamSpi.java:69)
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:357)
	... 7 more
javax.imageio.IIOException: Can't create cache file!
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:361)
	at java.desktop/javax.imageio.ImageIO.read(ImageIO.java:1409)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.base64ForIcon(HTMLReportArchive.java:379)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.startDocument(HTMLReportArchive.java:347)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:84)
	at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
	at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
	at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.nio.file.FileSystemException: /tmp/imageio14096395978721803670.tmp: Read-only file system
	at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:100)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116)
	at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215)
	at java.base/java.nio.file.Files.newByteChannel(Files.java:370)
	at java.base/java.nio.file.Files.createFile(Files.java:647)
	at java.base/java.nio.file.TempFileHelper.create(TempFileHelper.java:137)
	at java.base/java.nio.file.TempFileHelper.createTempFile(TempFileHelper.java:160)
	at java.base/java.nio.file.Files.createTempFile(Files.java:912)
	at java.desktop/javax.imageio.stream.FileCacheImageInputStream.<init>(FileCacheImageInputStream.java:102)
	at java.desktop/com.sun.imageio.spi.InputStreamImageInputStreamSpi.createInputStreamInstance(InputStreamImageInputStreamSpi.java:69)
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:357)
	... 7 more
javax.imageio.IIOException: Can't create cache file!
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:361)
	at java.desktop/javax.imageio.ImageIO.read(ImageIO.java:1409)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.base64ForIcon(HTMLReportArchive.java:379)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:111)
	at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
	at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
	at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.nio.file.FileSystemException: /tmp/imageio16141436145060857583.tmp: Read-only file system
	at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:100)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116)
	at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215)
	at java.base/java.nio.file.Files.newByteChannel(Files.java:370)
	at java.base/java.nio.file.Files.createFile(Files.java:647)
	at java.base/java.nio.file.TempFileHelper.create(TempFileHelper.java:137)
	at java.base/java.nio.file.TempFileHelper.createTempFile(TempFileHelper.java:160)
	at java.base/java.nio.file.Files.createTempFile(Files.java:912)
	at java.desktop/javax.imageio.stream.FileCacheImageInputStream.<init>(FileCacheImageInputStream.java:102)
	at java.desktop/com.sun.imageio.spi.InputStreamImageInputStreamSpi.createInputStreamInstance(InputStreamImageInputStreamSpi.java:69)
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:357)
	... 6 more
javax.imageio.IIOException: Can't create cache file!
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:361)
	at java.desktop/javax.imageio.ImageIO.read(ImageIO.java:1409)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.base64ForIcon(HTMLReportArchive.java:379)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:111)
	at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
	at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
	at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.nio.file.FileSystemException: /tmp/imageio11432123934610449415.tmp: Read-only file system
	at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:100)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116)
	at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215)
	at java.base/java.nio.file.Files.newByteChannel(Files.java:370)
	at java.base/java.nio.file.Files.createFile(Files.java:647)
	at java.base/java.nio.file.TempFileHelper.create(TempFileHelper.java:137)
	at java.base/java.nio.file.TempFileHelper.createTempFile(TempFileHelper.java:160)
	at java.base/java.nio.file.Files.createTempFile(Files.java:912)
	at java.desktop/javax.imageio.stream.FileCacheImageInputStream.<init>(FileCacheImageInputStream.java:102)
	at java.desktop/com.sun.imageio.spi.InputStreamImageInputStreamSpi.createInputStreamInstance(InputStreamImageInputStreamSpi.java:69)
	at java.desktop/javax.imageio.ImageIO.createImageInputStream(ImageIO.java:357)
	... 6 more
Failed to process file Top2_HS1_forward_raw.gz
javax.imageio.IIOException: Can't create cache file!
	at java.desktop/javax.imageio.ImageIO.createImageOutputStream(ImageIO.java:423)
	at java.desktop/javax.imageio.ImageIO.write(ImageIO.java:1589)
	at uk.ac.babraham.FastQC.Modules.AbstractQCModule.writeDefaultImage(AbstractQCModule.java:72)
	at uk.ac.babraham.FastQC.Modules.PerBaseQualityScores.makeReport(PerBaseQualityScores.java:199)
	at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:131)
	at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
	at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
	at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.nio.file.FileSystemException: /tmp/imageio851779165508807951.tmp: Read-only file system
	at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:100)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116)
	at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215)
	at java.base/java.nio.file.Files.newByteChannel(Files.java:370)
	at java.base/java.nio.file.Files.createFile(Files.java:647)
	at java.base/java.nio.file.TempFileHelper.create(TempFileHelper.java:137)
	at java.base/java.nio.file.TempFileHelper.createTempFile(TempFileHelper.java:160)
	at java.base/java.nio.file.Files.createTempFile(Files.java:912)
	at java.desktop/javax.imageio.stream.FileCacheImageOutputStream.<init>(FileCacheImageOutputStream.java:88)
	at java.desktop/com.sun.imageio.spi.OutputStreamImageOutputStreamSpi.createOutputStreamInstance(OutputStreamImageOutputStreamSpi.java:68)
	at java.desktop/javax.imageio.ImageIO.createImageOutputStream(ImageIO.java:419)
	... 7 more
cp: can't stat '/data/jwd07/main/096/212/96212319/outputs/dataset_fcf77fbf-77ec-4b44-893b-1b35f633262a_files/*/fastqc_data.txt': No such file or directory
1 Like
2

Can you please submit a bug report directly from the failed dataset in Galaxy?

3

Thanks for submitting the bug report.
Turns out we’ve broken older versions of fastqc with some recent configuration changes on Galaxy Europe. We will try to fix this, but in the meantime, please use the latest version (0.74+galaxy1) of fastqc, which is unaffected.

1 Like
4

Fixed.

All versions of fastqc are now working properly again.

Thanks again for letting us know @Orange_Pomeranian !

1 Like