I have the whole genome sequence of E.coli and Campylobacter spp. and would like to get the sequence type by CGMLST schema. I’ve tried galaxy tools: Multilocus sequence typing - blast and got only the allelic numbers data. How to get the nomenclature of sequence type? Thank you in advance.
Welcome, @Sakaoporn_Prachantas
There is a new set of tool wrappers available. Search the tool panel at UseGalaxy.eu with the keyword ChewBBACA to find these.
The Galaxy tools will align with the tutorial guidelines in the original documentation available at → Welcome to chewBBACA’s documentation! — chewBBACA 3.4.0 documentation. Each tool form will also list short form Help (scroll down on each to find this!).
We hope this helps! 