I’m using galaxy for my Genomics course. We are currently working on our annotation unit. Every time I try to run gffread the job looks like it will start, but then never actually updates in my history. I do not get an error message at all. I’ve been able to run other tools without any issues.
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You need to select one of the options that produces an output, e.g. the options under Feature File Output, or the options available if you specify a reference genome.
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