HISAT2 reporting an error on hg19 full genome. Local install

Thank you @jennaj ! Really appreciate your help! Hopefully this solves the issue. I will monitor the chat as well.

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Hello @jennaj
I was wondering if you have any updates on this issue regarding cvmfs hg19 index?

We installed Galaxy v23. Since it references the use of same cvmfs, the errors persist in the new Galaxy version as well (duplicate hg19 entries).

Thank you

Hi @prao123

The files will be corrected sometime before August. Maybe in July… and you can ask for an update later on if you don’t see it yet :slight_smile:

Thank you @jennaj ! If it can be expedited, I will really appreciate it :grinning: